Corner vignetting at widest aperture is pretty common, especially for shorter focal length. First of all, do a controlled comparison, shooting the same image without any filter holder and with filter holder. Then add a slot in filter (ND) and check the results. Compare whether the filter holder really causes the vignetting. If it's caused by the lens you have no choice but to accept it and correct the vignetting in post processing. Usually it only take a few clicks in LR, PS and others.
In case the filter holder causes the vignetting, you could try a 150mm type to see whether that works better. But keep in mind that prices for 150mm filters are significantly higher.